Most of these quest are not time-sensitive so you can go back to it at any time once it's been triggered. They are not chapter specific either and can usually be started at any time provided that the prerequisite sidequest has been completed.
This list simply gives the earliest possible timeframe a particular quest is made accessible to you. The game however does become quite linear in later chapters, so it's best to finish as much of these quests as you can when you still have the opportunity to explore freely.
Hammerhead Outpost
The Ever Valorous Regalia - 1000 EXP, Supercharger
Cindy will give you this mission after you've completed "The Ever Gleaming Regalia. Keep in mind that while you can start this quest in earlier chapters, you will not be able to finish it before chapter 7 since you can't travel to the Vesperpool until then. Anyway, once you can travel to the Vesperpool, mark this mission on your map and go to the spot where you'll encounter some Cockatrice and Basilisk. With the area cleared, look around for a rusted car chassis and you'll find the Supercharger on the ground nearby.
Galdin Quay
No Pain No Gem - 2000 EXP, Ruby Bracelet
This one comes from Dino after you've completed "Reliable Royalty". He wants you to find him a ruby stone this time, something that can only be mined in the Myrlwood. The location becomes available as soon as you start this quest, so just drive over there in the Regalia. You have one big dungeon to explore here and finding the rock can take a while. Or you can just look at the image above to find it quick, then take the stone back to Dino to finish up.
Royal Arms
The Myrlwood - 3000 EXP, Star of the Rogue
This is a dungeon that becomes accessible as soon as the sidequest No Pain, No Gem is activated. Move through the area until you reach the haven where you'll notice the path that splits off northwest. Follow this new route to a clearing and defeat the level 38 Treeant waiting there. It is susceptible to both greatsword and fire so use those to your advantage. Of course you can always put this off until much later if you don't feel like doing it this early. Go claim the Star of the Rogue in the royal tomb after killing the monster.