Where's all the bottles
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Sera gives you one when you bring her cat back. This is required to progress through the game.
You can buy one from Coro in the Faron Woods. You must restore light to the woods first, you must also get the key to the gate from Coro first.
You can fish one out of Hena's Fishing Hole. There is a small secton of water along the back wall (I don't think you can jump into it). Keep casting your line until you hook it. It may take may tries.
Jovani will give you an empty bottle for collecting 20 Poe Souls.
Interestingly enough, the methods of obtaining the empty bottles in Twilight Princess mirrors the methods in Ocarina of Time. One is obtained from finding lost animals (cuccoos vs. Cat), one is bought (Talon vs. Coro), one is underwater (Lake Hylia vs. Fishing Hole), and the last is found after a poe hunt (Big Poes vs. Imp Poes)
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