Legendaries that are unlocked after you beat the game
Zapdos: Go to the Power plant and battle it
Articuno: Work your way through the Seafoam Islands and find it.
Moltres: This Pokemon is found deep inside of Mt. Silver.
Rikou: A running Pokemon throughout Johto region, you can catch this Pokemon once you release it from Burned Tower.
Entei: Same as Rikou
Suicune: After you have met it before in Burned Tower and have seen it at various different locations throughout the story mode you can meet and battle him at his final location which is Route 25 in the Kanto Region.
I hope this helps.
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