How to get rid of Pokemon
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If you are wanting to store Pokemon out of your party for use later, then you should deposit them in Bill's PC. To do this, access his PC at any PC in a Pokemon Center and choose "Deposit Pokemon". This will store them in a box. To get them back out later, you will choose the option "Withdraw Pokemon" instead.
To permanently release Pokemon back out into the wild, you can choose the "Release" option also located at the PC.
Hope I Helped.
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