Why doesn't the yellow circle appear on the trees that I am trying to hookshot?
Also, how do you hookshot from your boat without going into treasure finder grappling hook?
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1. Because you can't hookshot them of course, or it is not yet long enough.
2. I don't think there is a boat in this game, have you got the wrong game?
I'm guessing you've played Wind Waker!?!
Well - Ocarina of Time was made before Wind Waker and the yellow circle doesn't appear in Ocarina of Time - there's no Grappling Hook here either (lol)!
But I'll try and answer what you're asking for Wind Waker...
The Hookshot and the Grappling Hook are 2 completely different items - the Grappling Hook used in your boat will bring out the treasure finding thing and the Hookshot will allow you to grab the tree (when there is a yellow circle that is - lol)!
There is a boat in this game but you can't hookshot from it (its the boat in the Shadow Temple)
Search for more answers for The Legend of Zelda: Ocarina of Time / Master Quest or ask your own question here.