How is OOT master quest different from the regular OOT. Its really bugging me so could somebody tell me.
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Master Quest has more puzzles to solve in the dungeons.
For example, a normal room in the original Ocarina of Time will be modified, so that you need to solve a puzzle (such as collecting silver Rupees to open a door) in the Master Quest version.
For more questions for The Legend of Zelda: Ocarina of Time / Master Quest check out the question page where you can search or ask your own question.