To Get the Poke Flute
To get the Poke Flute you first need to go to the Team Rocket Headquarters that is in Celadon City, once you have made your way through the headquarters and have defeated Giovanni he will give you a Silph Scope. Next after you obtain that item head back to Lavender Town and head into the Pokemon Tower. Make your way up to the Pokemon Tower to the top where you will need to save Mr. Fuji. Once you save him head out of the Pokemon Tower and to Mr. Fuji's house which is in the center of Lavender Town, there Mr. Fuji will give you the Poke Flute.
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